Introduction
Hp.GAMES provides several tools developed by Hp.GAMES team, collaborator, and other freely available software from Github that has already been converted into user-friendly website software. Some tools were already published on other well-known websites therefore, we will redirect the user into the correspondence website. These websites were previously assessed, selected, and recommended by Hp.GAMES team and collaborators.
Original applied Tools
Tools
Function
References(publication)
Source
Note
QUAST
Check the FASTA file quality
(Gurevich, Saveliev et al. 2013)
They will get the result as pdf or html that QUAST automatically made
Abricate
Identification of antimicrobial-resistant genes and plasmids based on the database.
(Seemann 2020)
They will give results as text file. The plasmid database was developed by Hp.GAMES team.
ISScan
Identification of Insertion Sequence
(Xie and Tangm 2017)
They will get the results as text file.
Hp.GAMES Genotyping
Genotyping of cagA, vacA, oipA
Hp.GAMES team
Hp.GAMES team
The genotyping criteria were developed by Hp.GAMES team and collaborator.
Redirect Website
Tools
Function
References(publication)
Source
Note
RAST
Annotation of the whole genome bacteria
(Aziz et al., 2008)
Other recommended software are Prokka and D-FAST
VFDB analyzer
Identification of virulence factor genes
(Liu et al., 2019)
-
PHASTER
Identification of temperate Phage in the genome
(Zhou et al., 2011, Arndt et al., 2016)
-
